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Vincent Fourmond: Define a function with inline Ruby code in QSoas

October 9, 2017 22:31 , by Planet Debian - 0no comments yet | No one following this article yet.
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QSoas can read and execute Ruby code directly, while reading command files, or even at the command prompt. For that, just write plain Ruby code inside a ruby...ruby end block. Probably the most useful possibility is to define elaborated functions directly from within QSoas, or, preferable, from within a script; this is an alternative to defining a function in a completely separated Ruby-only file using ruby-run. For instance, you can define a function for plain Michaelis-Menten kinetics with a file containing:

def my_func(x, vm, km)
  return vm/(1 + km/x)
ruby end

This defines the function my_func with three parameters, , (vm) and (km), with the formula:

You can then test that the function has been correctly defined running for instance:

QSoas> eval my_func(1.0,1.0,1.0)
 => 0.5
QSoas> eval my_func(1e4,1.0,1.0)
 => 0.999900009999

This yields the correct answer: the first command evaluates the function with x = 1.0, vm = 1.0 and km = 1.0. For , the result is (here 0.5). For , the result is almost . You can use the newly defined my_func in any place you would use any ruby code, such as in the optional argument to generate-buffer, or for arbitrary fits:

QSoas> generate-buffer 0 10 my_func(x,3.0,0.6)
QSoas> fit-arb my_func(x,vm,km)

To redefine my_func, just run the ruby code again with a new definition, such as:
def my_func(x, vm, km)
  return vm/(1 + km/x**2)
ruby end
The previous version is just erased, and all new uses of my_func will refer to your new definition.

See for yourself

The code for this example can be found there. Browse the qsoas-goodies github repository for more goodies !

About QSoas

QSoas is a powerful open source data analysis program that focuses on flexibility and powerful fitting capacities. It is released under the GNU General Public License. It is described in Fourmond, Anal. Chem., 2016, 88 (10), pp 5050–5052. Current version is 2.1. You can download its source code or buy precompiled versions for MacOS and Windows there.

Source: http://vince-debian.blogspot.com/2017/10/define-function-with-inline-ruby-code.html

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